Genevieve Buckley

Microscopium: Interactive Exploration of Large Imaging Datasets

Microscopium is an open source library and web application to explore large datasets of related images interactively. It is being developed openly at, and runs on a SciPy stack of NumPy, SciPy, scikit-image, scikit-learn, and Bokeh. We will show that 2D embedding of images according to similarity is sufficient to discover relationships between drugs and genes of interest.